The I2C components on the CMDmux board can clash with components on the Active Board itself. The fixes are outlined below.
The ADC clashes with the (same) ADC's on the Active Board and the MCP23017 IO expander on the Carrier Cards.
Use the AD7993-1 model that avoids clashes with AD7993-0 (Active Board) and the IO expander. The resulting address is 0x24.
The original address (0x21) clashes with the OFin driver on the Carrier Card and the LV ADC on the Active Board. The fix is to change the address to 0x27 by modifying the connections on the PCB.
A1/A2 connection to ground. This is below the MCP23008 chip and thus has to be done before the chip is loaded.
A0/A1/A2 pins together. In principle, only A1 has to be shorted to A0. The A1 and A2 are already connected between the pads.